FastQCFastQC Report
Wed 8 May 2024
EGAF00007961325

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961325
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484864
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31540.6504916842661035No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10140.20913080781414994No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6810.14045175554382258No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6670.1375643479408659No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6490.13385196673706443No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5860.12085863252375925No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5260.10848402851108764No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5230.10786529831045408No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)