FastQCFastQC Report
Wed 8 May 2024
EGAF00007961326

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961326
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459762
Total Bases20.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7140.15529774100512875No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5870.12767475345939855No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5740.12484720355314272No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5280.11484202696177587No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4770.10374933117569525No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4710.1024443081420387No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)