FastQCFastQC Report
Wed 8 May 2024
EGAF00007961327

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961327
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459762
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60971.3261209060339916No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9350.2033660894114781No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6240.1357223955002806No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5950.12941478417094063No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5880.1278922572983413No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5620.12223715748582963No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5180.11266698857234832No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4890.10635937724300835No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4700.10222680430309594No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)