FastQCFastQC Report
Wed 8 May 2024
EGAF00007961328

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961328
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487299
Total Bases21.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7270.14918971719621835No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6250.1282580099692386No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5910.12128077422691202No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5740.11779215635574873No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4920.10096470544778463No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)