FastQCFastQC Report
Wed 8 May 2024
EGAF00007961329

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961329
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487299
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29960.6148175965885422No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9430.1935156854415872No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6450.13236226628825423No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6390.13113098939254952No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6280.12887364841709095No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6030.12374332801832141No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5390.11060970779747135No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4980.10219598234348932No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)