FastQCFastQC Report
Wed 8 May 2024
EGAF00007961331

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961331
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467409
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60301.2900906914501005No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8910.1906253409754626No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6880.14719442715052555No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6220.13307403152271352No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5730.12259070749600458No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5730.12259070749600458No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4940.10568902182029015No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4850.10376351332558852No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4720.10098222327768615No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)