FastQCFastQC Report
Wed 8 May 2024
EGAF00007961332

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961332
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496136
Total Bases21.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT19460.39223116242320655No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13690.2759324056307142No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13280.26766854249641225No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11510.23199284067271878No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11060.2229227469887289No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC10730.21627134495380299No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10290.2074028089072351No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10230.20619346308270314No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG9840.19833271522324525No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9450.19047196736378735No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT9220.1858361417030814No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8990.18120031604237546No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8470.17071931889643163No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG8430.16991308834674365No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG8380.16890530015963365No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8190.1650757050486157No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7600.15318380444071786No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG7280.14673396004321396No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7270.14653240240579196No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT7270.14653240240579196No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7250.14612928713094797No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG7030.14169501910766402No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6680.1346405017978941No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG6620.13343115597336214No Hit
GGACTGGTCCGGCACGTGCAGAACCGGCAGGTGCATGCGAGGCG6510.13121402196172016No Hit
ATCGCTGCTGTTGTTGGTAGAGTTCGCGGCCTGAACGGACAGTT6170.12436106228937227No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5920.11932212135382234No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5890.11871744844155635No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG5810.11710498734218036No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5710.1150894109679604No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5690.1146862956931164No Hit
CAGGGAGTTAGTCAGAGAGGTCAGGCCGCTAGACGCGGTCTGCA5500.11085670058209846No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5490.11065514294467645No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5140.10360062563490656No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG5120.10319751036006256No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5060.10198816453553057No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)