FastQCFastQC Report
Wed 8 May 2024
EGAF00007961333

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961333
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496136
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA36820.7421352209877937No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31270.6302707322185852No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17460.3519196349388071No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16600.3345856781205153No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15290.3081816276182337No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11210.22594611155005886No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG11060.2229227469887289No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11050.2227211893513069No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10760.216876017866069No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10730.21627134495380299No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10420.21002305819372108No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10230.20619346308270314No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9650.19450312011222728No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA9610.1936968895625393No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9570.1928906590128513No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8950.18039408549268748No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8840.1781769514810455No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8790.17716916329393553No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8550.1723317799958076No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8270.1666881661479917No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7840.1580211877388458No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7820.1576180724640018No Hit
GCGGCTGGTCTGGCAATTTCTCAGCGCATGA7780.15681184191431383No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7380.14874953641743394No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7360.14834642114258995No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6910.13927632745860005No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC6710.13524517471016012No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA6610.13322959833594017No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6480.13060934904945418No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6340.12778754212554622No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6060.12214392827773031No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC5830.11750810261702437No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5770.11629875679249238No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5760.11609719915507037No Hit
AAACGTATCAACAGCGCTGCCGACGACGCAG5640.11367850750600643No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT5350.1078333360207685No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5340.10763177838334649No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5280.1064224325588145No Hit
GGTCTGACCATTAGCGAAAAAATGCGCAAAC5170.10420529854717255No Hit
GGCCTGACCATTAGCGAGAAGATGCGTAAAC5140.10360062563490656No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5120.10319751036006256No Hit
ATCAACCGTGCAGCGGACGATGCGGCTGGTC5070.10218972217295257No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)