FastQCFastQC Report
Wed 8 May 2024
EGAF00007961337

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961337
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499458
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA38980.780446003467759No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30700.6146662982673218No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18060.3615919656908088No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17130.34297178141104956No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15840.3171437838617061No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG11480.22984915648563042No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11480.22984915648563042No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11450.22924850537983174No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11180.2238426454276436No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10810.2164346151227931No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10440.20902658481794265No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA10330.20682419743001412No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10270.20562289521841676No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9880.19781443084303385No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9450.18920509832658602No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9250.18520075762126145No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8800.17619099103428115No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8800.17619099103428115No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8420.16858274369416448No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8240.16497883705937236No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8220.1645784029888399No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7770.1555686364018596No Hit
GCGGCTGGTCTGGCAATTTCTCAGCGCATGA7300.14615843574434687No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7160.14335539725061966No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7120.14255452910955474No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7010.14035214172162624No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC6780.135747149910503No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6150.12313347668873058No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5940.11892891894813978No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA5840.1169267485954775No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5750.11512479527808143No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5720.11452414417228275No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5720.11452414417228275No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC5630.11272219085488669No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5620.11252197381962047No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5560.1113206716080231No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT5540.11092023753749064No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5530.11072002050222442No Hit
AAACGTATCAACAGCGCTGCCGACGACGCAG5400.10811719904376343No Hit
GGTCTGACCATTAGCGAAAAAATGCGCAAAC5250.10511394351477002No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5250.10511394351477002No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGG5170.1035122072326402No Hit
GTCCACATCAAACTGCCGAAGCTGGCTGCAA5120.10251112205630904No Hit
ATCAACCGTGCAGCGGACGATGCGGCTGGTC5080.10171025391524412No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)