FastQCFastQC Report
Wed 8 May 2024
EGAF00007961338

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961338
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477894
Total Bases21 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT18870.3948574370048588No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC14460.30257755904028927No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12500.26156427994492504No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11330.23708186334208003No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC11000.23017656635153402No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10940.22892105780779837No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG9970.20862366968407217No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9930.20778666398824844No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT9760.20422938978099744No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9650.20192762411748214No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9150.19146505291968513No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8730.18267649311353565No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8020.16781964201266392No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7940.16614563062101637No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7720.1615420992939857No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7710.16133284787002974No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7650.16007733932629412No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7450.1558923108471753No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG7220.1510795280961887No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6960.14563899107333425No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6910.14459273395355457No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6900.14438348252959862No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6630.13873369408278824No Hit
GGACTGGTCCGGCACGTGCAGAACCGGCAGGTGCATGCGAGGCG6290.13161914566828628No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG6200.1297358828526828No Hit
ATCGCTGCTGTTGTTGGTAGAGTTCGCGGCCTGAACGGACAGTT5740.12011031735070957No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG5580.11676229456741452No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5420.1134142717841195No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5360.11215876324038386No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5350.1119495118164279No Hit
ACGATCGGTGTCTTTGGAGTTAGTACCGTTCGCTGCCTGAACTG5260.11006624900082446No Hit
CAGGGAGTTAGTCAGAGAGGTCAGGCCGCTAGACGCGGTCTGCA5250.1098569975768685No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5250.1098569975768685No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG5210.10901999188104475No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5040.10546271767379377No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5030.10525346624983783No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4990.10441646055401407No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4820.10085918634676308No Hit
ATCACGGTCAGACTGCGCGTTGGTACCGTTTGCGGACTGAACTG4810.10064993492280715No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)