FastQCFastQC Report
Wed 8 May 2024
EGAF00007961339

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961339
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477894
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61741.2919182915039735No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA36830.7706729944297271No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17370.3634697234114678No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15920.3331282669378565No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14930.31241237596621846No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG11310.23666336049416817No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11130.23289683486296126No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10610.22201576081725236No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10510.21992324657769297No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10360.21678447521835384No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10330.21615672094648605No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10120.21176244104341133No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA9950.2082051668361603No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9200.1925113100394648No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8620.1803747274500203No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8530.17849146463441684No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8310.17388793330738614No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8200.17158616764387083No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8110.16970290482826736No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8080.16907515055639952No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7900.1653086249251926No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7670.160495842174206No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7450.1558923108471753No Hit
GCGGCTGGTCTGGCAATTTCTCAGCGCATGA7250.1517072823680565No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7040.14731300246498177No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6930.14501123680146644No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC6450.13496716845158133No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA6080.12722486576521155No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5710.11948256307884174No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5700.1192733116548858No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5670.11864555738301799No Hit
GGCCTGACCATTAGCGAGAAGATGCGTAAAC5620.1175993002632383No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5580.11676229456741452No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5530.11571603744763484No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC5500.11508828317576701No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT5490.11487903175181108No Hit
AAACGTATCAACAGCGCTGCCGACGACGCAG5440.11383277463203137No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5330.11153100896851603No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5270.11027550042478039No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5220.1092292433050007No Hit
GGTCTGACCATTAGCGAAAAAATGCGCAAAC5030.10525346624983783No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG4800.10044068349885121No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)