FastQCFastQC Report
Wed 8 May 2024
EGAF00007961340

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961340
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490049
Total Bases21.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20650.4213864327852929No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17810.363433044450657No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15330.31282586027111575No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13870.28303292119767615No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13650.27854357421400716No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13600.27752326808135513No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11770.24018006362629044No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11460.23385416560384778No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9870.2014084305855129No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8850.18059418547941125No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8660.1767170221753335No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8410.17161549151207328No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7910.16141243018555287No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7720.15753526688147512No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC7610.15529059338964063No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7500.15304591989780614No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC7230.14753626678148513No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG6800.13876163404067757No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6610.13488447073659982No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6020.12284485837130574No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5760.11753926648151512No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5680.11590677666927184No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5530.11284585827131571No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5430.11080524600601165No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC5350.10917275619376837No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5100.10407122553050818No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5010.1022346744917345No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5000.1020306132652041No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG4950.10101030713255205No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)