FastQCFastQC Report
Wed 8 May 2024
EGAF00007961341

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961341
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490049
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36470.7442112931563987No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30270.6176933327075456No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24230.49444035188317903No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG21540.4395478819464992No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14420.2942562886568486No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14080.28731820695481475No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13150.2683405128874868No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12670.25854557401402717No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12160.24813845146097632No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9190.18753226718144514No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9130.18630789982226267No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8500.17345204255084695No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8480.17304392009778613No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8360.17059518537942125No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8230.16794238943452594No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA7900.16120836895902246No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG7440.1518215525386237No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7070.1442712871569986No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6840.13957787894679918No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6460.13182355233864368No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6240.12733420535497472No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6210.1267220216753835No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6190.12631389922232267No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6070.12386516450395776No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5810.11855957261416715No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5670.11570271544274144No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5600.11427428685702858No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5520.11264179704478532No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5440.11100930723254206No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC5310.10835651128764674No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5270.10754026638152511No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5220.10651996024887307No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5110.10427528675703858No Hit
TCCTACACCAACGGCAAACTGACTATCACCC4940.10080624590602164No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)