FastQCFastQC Report
Wed 8 May 2024
EGAF00007961342

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961342
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460980
Total Bases20.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT18360.39828192112456073No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16640.36097010716300054No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14190.30782246518287126No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13140.28504490433424445No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12900.2798386047117012No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12520.27159529697600765No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10030.2175799383921211No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9840.21345828452427437No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8690.1885114321662545No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8500.18438977829840775No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8220.17831576207210725No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8030.17419410820426048No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC7230.15683977612911623No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC7220.15662284697817694No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7030.15250119311033017No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6980.15141654735563365No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6390.13861772745021475No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG5860.1271204824504317No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5730.12430040348822075No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5500.11931103301661677No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5190.11258622933749836No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5160.11193544188468046No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5050.10954922122434813No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC4990.10824764631871232No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4690.10173977179053321No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4690.10173977179053321No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4650.10087205518677599No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT4630.10043819688489738No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)