FastQCFastQC Report
Wed 8 May 2024
EGAF00007961343

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961343
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460980
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62211.3495162479934053No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34780.7544795869668967No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22930.49741854310382233No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18900.40999609527528313No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13340.2893834873530305No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12900.2798386047117012No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11400.24729923207080567No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11010.23883899518417287No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10670.23146340405223653No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8520.18482363660028636No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8460.18352206169465052No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8450.18330513254371122No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA7690.16681851707232417No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG7620.16530001301574906No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7460.1618291466007202No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7240.15705670528005553No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6880.14924725584624063No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6740.14621024773309038No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5840.12668662414855308No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5800.12581890754479588No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5800.12581890754479588No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5630.1221311119788277No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5540.12017874962037399No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5410.11735867065816304No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5410.11735867065816304No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC5190.11258622933749836No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG5180.11236930018655907No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5170.11215237103561976No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5140.11150158358280186No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5130.11128465443186256No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG4970.1078137880168337No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4860.10542756735650136No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4780.10369213414898695No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)