FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007961344

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961344
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491616
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT21030.4277728959187659No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17840.36288485321877234No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14660.29820022131094187No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14510.29514905942849706No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14490.2947422378441711No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13690.27846937447113196No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11980.24368612901126083No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10860.22090412028900602No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9670.19669823602161038No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9360.1903925014645577No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9280.1887652151272538No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8670.17635715680531144No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC8080.16435592006769512No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC8040.16354227689904316No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7690.15642289917333854No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7640.1554058452125236No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7330.14910011065547094No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG6320.12855562064700907No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6110.12428399401158627No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5780.11757143787020764No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC5760.11716461628588166No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5760.11716461628588166No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5750.11696120549371868No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5590.11370663281911085No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5530.11248616806613292No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5510.11207934648180694No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5190.10557020113259127No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5130.10434973637961337No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5040.10251903925014645No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)