FastQCFastQC Report
Wed 8 May 2024
EGAF00007961345

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961345
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491616
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37730.7674689188309575No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30230.6149108247087157No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24250.4932711709952483No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG21590.4391639002798932No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14550.295962702597149No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14380.2925047191303782No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13210.2687056564473085No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12750.259348760007811No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11670.23738039445420817No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9830.19995280869621818No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9230.18774816116643886No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9000.1830697129466901No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA8500.17289917333854066No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG8470.1722889409620517No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8470.1722889409620517No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8320.16923777907960685No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7720.1570331315498275No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7310.14869328907114496No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6540.13303065807459483No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6360.129369263815661No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6260.1273351558940311No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6150.12509763718023822No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6120.12448740480374926No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6100.12408058321942331No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6050.12306352925860835No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5920.12041918896048948No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5860.11919872420751157No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC5810.11818167024669661No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5790.11777484866237063No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5590.11370663281911085No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG5510.11207934648180694No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5480.11146911410531797No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5190.10557020113259127No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)