FastQCFastQC Report
Wed 8 May 2024
EGAF00007961346

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961346
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469749
Total Bases20.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19120.40702587977834975No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16350.34805821832510553No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14940.31804218848789456No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13920.29632846477586966No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13100.2788723339485555No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12030.2560942120153529No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10860.23118729363979487No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10230.21777587605295595No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9060.19286895767739792No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8400.1788189011578524No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8060.17158099325384407No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7890.16796203930183992No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC7700.1639173260613647No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC7660.16306580748442254No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7610.16200140926324483No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7310.15561501993617868No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7130.15178318633993898No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG6050.12879218476250082No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5740.12219291579119913No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5340.11367773002177758No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5290.1126133318005999No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5270.11218757251212881No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5150.10963301678130237No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC5100.10856861856012466No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5090.10835573891588912No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5080.1081428592716536No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5060.1077170999831825No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT4770.10154359030035189No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4730.10069207172340973No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)