FastQCFastQC Report
Wed 8 May 2024
EGAF00007961347

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961347
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469749
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG59201.2602474938743882No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36600.779139497902071No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22600.48110799597231707No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20320.4325714370866144No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12930.27525337999655136No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12730.2709957871118406No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12330.2624806013424191No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11500.24481159087086932No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11080.2358706458129767No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8630.18371513297526978No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8490.18073481795597224No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA8230.17519994720584822No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8020.17072947467690192No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG7760.16519460392677793No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7740.16476884463830682No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7660.16306580748442254No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7510.15987261282088946No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6560.1396490466185133No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5950.12666338832014543No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5940.1264505086759099No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5870.12496035116626113No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5830.12410883258931898No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5790.12325731401237683No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5700.12134139721425698No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5640.12006411934884374No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5560.11836108219495944No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5540.11793532290648835No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG5430.11559364681989744No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5270.11218757251212881No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC5220.11112317429095113No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5000.10643982211776927No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4870.10367238674270726No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4860.10345950709847174No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)