FastQCFastQC Report
Wed 8 May 2024
EGAF00007961349

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961349
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476356
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37180.7805086951775563No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31350.6581212370579986No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG18140.3808076312673715No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16660.3497384309214117No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15530.3260166766032127No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10580.22210279706773925No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9810.2059384158066656No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9660.20278951036619672No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8240.17297987219642452No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8060.16920118566786185No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7250.15219709628932984No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7020.14736877461394418No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7000.146948920555215No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6970.14631913946712125No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6550.13750220423380832No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6410.13456322582270402No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6380.13393344473461025No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6230.13078453929414136No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6170.1295249771179538No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5960.12511650950129735No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5630.11818891753226579No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5600.117559136444172No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5550.11650950129734905No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5520.11587972020925526No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5510.11566979317989066No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5130.10769256606403615No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5020.10538336874102562No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4900.1028642443886505No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4900.1028642443886505No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4850.10181460924182754No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4780.1003451200362754No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)