FastQCFastQC Report
Wed 8 May 2024
EGAF00007961350

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961350
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449810
Total Bases19.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG15990.3554834263355639No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15190.33769813921433495No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13360.2970142949245237No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10760.23921211178052956No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9470.21053333629754786No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8230.18296614125964297No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7610.1691825437406905No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7420.16495853804939864No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6670.1482848313732465No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6460.14361619350392388No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6430.1429492452368778No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6240.1387252395455859No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5980.13294502123118648No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5850.1300549120739868No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5810.12916564771792535No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5350.11893910762321869No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5270.1171605789110958No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG4970.11049109624063494No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4930.10960183188457348No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT4880.10849025143949667No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4780.10626709054934307No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG4730.10515551010426626No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG4690.10426624574820478No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)