FastQCFastQC Report
Wed 8 May 2024
EGAF00007961351

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961351
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449810
Total Bases13.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61461.3663546830884152No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35960.799448656099242No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG17290.38438451790756095No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14750.327916231297659No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13870.30835241546430714No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10040.2232053533714235No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8820.1960827905115493No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8460.18807941130699626No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7390.16429158978235256No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6670.1482848313732465No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6640.14761788310620041No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6580.14628398657210823No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6490.14428314177096996No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6290.13983681999066272No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6180.13739134301149375No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG5890.13094417643004824No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5880.1307218603410329No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5840.12983259598497143No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5770.1282763833618639No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5750.12783175118383316No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5690.126497854649741No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5460.12138458460238767No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5360.11916142371223405No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5210.11582668237700361No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4990.11093572841866567No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4960.11026878015161956No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG4910.10915719970654275No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4850.10782330317245059No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4690.10426624574820478No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG4520.10048687223494365No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)