FastQCFastQC Report
Wed 8 May 2024
EGAF00007961352

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961352
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477702
Total Bases21 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG16800.35168368564502556No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15180.317771330243541No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14020.2934884090918606No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11610.24303854704397304No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9730.20368346793607728No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9010.18861130997986192No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8390.17563250729534313No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8200.1716551322791196No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7720.16160702697497603No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7340.15365227694252903No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7340.15365227694252903No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7190.15051224403498414No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6870.1438135071655551No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6750.14130148083951918No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6060.1268573294648128No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5690.11911191495953544No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5660.11848390837802647No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5420.11345985572595468No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG5370.11241317809010638No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5290.11073849387274913No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5200.10885447412822219No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5160.10801713201954358No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)