FastQCFastQC Report
Wed 8 May 2024
EGAF00007961353

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961353
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477702
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37340.7816588584515033No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30160.6313559499436887No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG17880.3742919225793486No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16330.3418449158680516No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16020.3353555145257922No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10510.22001163905531063No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9690.2028461258273987No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9450.19782207317532688No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8180.1712364612247803No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8080.16914310595308374No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7610.1593043361761098No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7450.15595496774139525No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7030.1471628756002696No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6480.13564942160593843No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6320.1323000531712239No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6310.13209071764405422No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6250.1308347044810363No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6220.13020669789952732No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6190.12957869131801836No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6050.12664799393764312No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5900.12350796103009826No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5840.12225194786708031No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5710.11953058601387476No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5640.11806523732368715No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG5550.11618121757916024No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5360.11220384256293674No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5280.11052915834557946No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5270.1103198228184098No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4990.10445842805765937No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC4840.1013183951501145No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)