FastQCFastQC Report
Wed 8 May 2024
EGAF00007961354

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961354
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456963
Total Bases20.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG16890.36961417007503894No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15000.32825414749115356No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14110.30877773474001174No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11560.2529745296665157No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8880.1943264553147629No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8570.18754253626661238No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8510.18622951967664778No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8060.1763818952519132No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6960.15230992443589525No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6850.14990272735429347No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6610.144650660994435No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6610.144650660994435No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6250.1367725614546473No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6210.13589721706133756No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6050.1323958394880986No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5520.1207975262767445No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5340.11685847650685066No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG5250.11488895162190375No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG4940.10810503257375323No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4900.1072296881804435No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG4850.10613550768880631No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG4790.1048224910988417No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4700.10285296621389478No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4700.10285296621389478No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT4690.10263413011556734No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4570.10000809693563811No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)