FastQCFastQC Report
Wed 8 May 2024
EGAF00007961357

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961357
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460340
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29480.6403962288743104No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25380.5513316244514924No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21050.45727071295129684No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC17510.3803710301081809No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG15420.33496980492679324No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG15370.33388365121431984No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA13050.2834861189555546No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10470.22744058739192768No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG9820.21332058912977367No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9700.2107138202198375No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA9090.19746274492766216No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG9070.1970282834426728No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG8360.1816049007255507No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA8280.17986705478559326No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7950.1726984402832689No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA7130.1548855193987053No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG6780.14728244341139157No Hit
CAGACTGTTACCTCTACCCCGGTCCAGGGCC6780.14728244341139157No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6650.14445844375896078No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC6530.14185167484902464No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6010.13055567623930137No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5890.12794890732936526No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG5880.12773167658687057No Hit
CAGACCCCAGAACAGTCTACCCCGTCTCGCA5560.12078029282704089No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC5380.11687013946213669No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5310.11534952426467393No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4780.10383629491245601No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT4750.10318460268497198No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)