FastQCFastQC Report
Wed 8 May 2024
EGAF00007961358

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961358
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432540
Total Bases19 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG14790.34193369399361906No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG14090.3257502196328663No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG13610.3146529800712073No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG10710.24760715771951725No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9710.2244879086327276No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9470.21893928885189806No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9080.20992278170805012No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8910.20599250936329588No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC8700.20113746705507007No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG7060.163221898552735No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6780.1567485088084339No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6210.14357053682896379No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6100.14102741942941693No Hit
TACGGAAGCAGATGCGCTCGGCTGACGGGCGGAAGACGCAGAAG5990.13848430202987005No Hit
GTCGAAAGCGACGGTTTTCATGCCGGTGGTGGATTTCACCGGGC5850.13524760715771952No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5590.1292366023951542No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA5510.12738706246821105No Hit
GGTATCGGAAGAGTCGTCATCCTCTTCTTCGGAGTCTTCTACCG5430.12553752254126785No Hit
CTTGCGAGACGCTGCGCTAGTAGGGGCAACCGCCGGGTCCGGTT5130.11860174781523096No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG4960.11467147547047672No Hit
TGGGGTACCGGATACCTGTTTTTCCAGGCGACCCTGAACCGGAG4880.11282193554353354No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA4810.11120358810745828No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA4470.10334304341794978No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT4440.1026494659453461No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC4350.10056873352753504No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)