FastQCFastQC Report
Wed 8 May 2024
EGAF00007961359

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961359
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432540
Total Bases13.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG59111.3665788135201369No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23930.5532436306468766No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20190.4667776390622833No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC15450.3571923983909003No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG14580.33707865168539325No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG14120.32644379710547No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA11230.2596291672446479No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG9550.22078882877884126No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9310.21524020899801175No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9100.21038516668978594No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG8920.20622370185416375No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA8640.19975031210986266No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7540.17431913811439403No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG7360.1701576732787719No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA7350.169926480787904No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA6940.16044758866232026No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC6500.1502751190641328No Hit
CAGACTGTTACCTCTACCCCGGTCCAGGGCC6340.14657603921024645No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6200.1433393443380959No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6180.1428769593563601No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5980.1382531095390022No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG5750.13293568224904054No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5690.13154852730383318No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC5280.1220696351782494No Hit
CAGACCCCAGAACAGTCTACCCCGTCTCGCA5190.11998890276043835No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG4650.10750450825357193No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA4500.10403662089055349No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT4410.1019558884727424No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4390.10149350349100662No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)