FastQCFastQC Report
Wed 8 May 2024
EGAF00007961361

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961361
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461325
Total Bases14.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29140.6316588088657671No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25870.5607760255784967No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23350.5061507613938113No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC16960.36763669863978754No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG16010.3470438411098466No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG15530.3366390288841922No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA13260.2874329377337019No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10240.22196932748062645No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG9990.21655015444643147No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG9820.21286511678317888No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8840.19162195848913458No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA8640.18728662006177857No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT8190.1775321086002276No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA8170.177098574757492No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA7850.17016203327372242No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG7780.16864466482414783No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6810.1476182734514713No Hit
CAGACTGTTACCTCTACCCCGGTCCAGGGCC6730.1458841380805289No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG6700.14523383731642553No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC6660.14436676963095432No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6230.13504579201213895No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5980.12962661897794397No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5770.12507451362922017No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG5750.12464097978648458No Hit
CAGACCCCAGAACAGTCTACCCCGTCTCGCA5200.11271879911125561No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC5160.11185173142578442No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5020.10881699452663524No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT4690.10166368612149787No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)