FastQCFastQC Report
Wed 8 May 2024
EGAF00007961363

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961363
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441557
Total Bases13.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG56711.2843188988058167No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24740.560290064476387No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20480.4638132789198224No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC16520.37413063319118484No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG14730.3335922655512199No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG14320.3243069411197196No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA12660.286712700738523No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG9570.21673306051087404No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9310.21084480599333721No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9180.20790067873456883No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG8810.19952123961345875No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA8510.19272709978553165No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG7800.17664763552610424No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA7620.17257115162934797No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7550.17098585233616498No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA7420.1680417250773966No Hit
CAGACTGTTACCTCTACCCCGGTCCAGGGCC6490.14697989161082262No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG6420.14539459231763963No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6400.1449416496624445No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC6200.14041222311049312No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG6130.13882692381731013No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6020.13633573921373685No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5560.12591805814424867No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC5020.1136886064539799No Hit
CAGACCCCAGAACAGTCTACCCCGTCTCGCA4820.1091591799020285No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4810.10893270857443094No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG4700.10644152397085768No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG4680.10598858131566254No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA4520.10236504007410142No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)