FastQCFastQC Report
Wed 8 May 2024
EGAF00007961364

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961364
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458556
Total Bases20.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCAGGTCCGGCTGCGGCGGCAGCATTGGACGCGCCGGGGCGG15050.32820418880136776No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG14020.30574237388672265No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13380.29178551801742864No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11280.24598958469630752No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10480.22854351485968996No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9850.21480473486335366No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG9540.20804438280166435No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9080.19801289264560926No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8460.18449218852223065No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8000.17446069836617556No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7670.1672641945585708No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG7600.16573766344786678No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7380.16093999424279695No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7030.15330733868927676No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6640.1448023796439257No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6080.13259013075829343No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6070.1323720548853357No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG5990.13062744790167397No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT5900.12866476504505447No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5420.11819712314308393No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5060.11034639171660604No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG4870.10620295013040937No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4840.1055487225115362No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4840.1055487225115362No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4840.1055487225115362No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4780.1042402672737899No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA4680.10205950854421271No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC4600.10031490156055095No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)