FastQCFastQC Report
Wed 8 May 2024
EGAF00007961365

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961365
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458556
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30870.67320021982048No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21050.4590497125759994No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17960.39166426783206415No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCT16530.36047941799911026No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT14820.3231884437233402No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11790.25711145421715126No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10740.23421348755659066No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10650.23225080469997123No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9530.20782630692870666No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9420.2054274723261717No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8140.1775137605875836No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7820.1705353326529366No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7340.16006769075096608No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7240.15788693202138887No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6760.14741929011941834No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6290.1371697240904055No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG6210.1354251171067438No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5970.13019129615575853No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5860.1277924615532236No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA5780.12604785456956186No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5550.1210321094915343No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5480.11950557838083026No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5270.11492598504871815No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5170.11274522631914095No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5030.10969216409773287No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4950.10794755711407113No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4920.10729332949519796No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4880.10642102600336709No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4710.10271373616308585No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG4590.10009682568759323No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4590.10009682568759323No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)