FastQCFastQC Report
Wed 8 May 2024
EGAF00007961366

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961366
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433329
Total Bases19 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCAGGTCCGGCTGCGGCGGCAGCATTGGACGCGCCGGGGCGG13690.3159262361854388No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG13110.30254148695333105No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12230.28223359156668487No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10480.24184857233187718No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10290.23746391310066947No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10130.23377156848491562No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8940.20630975540524635No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8230.18992497617283866No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8100.18692494617253866No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7440.171694024632554No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG7360.1698478523246771No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7360.1698478523246771No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7160.1652324215549848No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6300.14538606924530784No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6290.14515529770682323No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5900.1361552077059232No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG5740.13246286309016939No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT5590.12900129001290014No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5160.11907811385806165No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5060.11677039847321549No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4830.11146265308806934No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG4720.10892416616473857No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4590.10592413616443858No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4560.10523182154898471No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4550.10500105001050011No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4530.10453950693353087No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)