FastQCFastQC Report
Wed 8 May 2024
EGAF00007961367

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961367
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433329
Total Bases13.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60691.4005524670631322No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19090.4405428669671312No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16420.3789268661917388No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCT14880.343388049265108No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT13950.3219262961860388No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11040.25477177848701565No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10960.25292560617913873No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10330.23838699925460793No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8960.2067712984822156No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8810.20330972540494635No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7880.1818479723258771No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7390.17054016694013094No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6940.16015544770832324No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6590.15207844386136168No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6410.14792455616863862No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG6070.14007832386016167No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5810.13407826385956167No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA5740.13246286309016939No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5430.1253089453971463No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5250.12115505770442318No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5220.12046274308896934No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5130.11838579924260781No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5030.11607808385776165No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4970.11469345462685396No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4870.1123857392420078No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG4750.10961648078019243No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4420.10200102001020009No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4410.1017702484717155No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)