FastQCFastQC Report
Wed 31 May 2023
EGAF00007961368

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961368
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461877
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCAGGTCCGGCTGCGGCGGCAGCATTGGACGCGCCGGGGCGG15160.32822591295951087No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG13720.2970487813855204No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12880.2788621213006926No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11360.24595292686148043No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10880.23556054967015025No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10430.22581769605327823No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG9230.19983675307495286No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8950.1937745330466769No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8900.19269199375591337No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG7850.16995866864987866No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7810.1690926372172678No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7770.16822660578465695No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7760.16801009792650423No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7540.16324692504714458No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6950.1504729614161346No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6670.14441074138785867No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT6330.1370494742106665No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6170.13358534848022308No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG6050.13098725418239054No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5670.12275995557258751No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5340.11561519625354802No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5320.1151821805372426No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5000.10825392907635582No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG4740.10262472476438532No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4740.10262472476438532No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)