FastQCFastQC Report
Wed 8 May 2024
EGAF00007961369

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961369
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461877
Total Bases14.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30030.650173098032593No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21480.4650588793120246No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17630.3817033539232306No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCT16590.3591865366753486No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT14620.3165344886192645No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12430.2691192676838206No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11550.25006657616638195No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11110.24054023040766265No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10260.22213706246468215No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9080.1965891352026622No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8180.17710342796891815No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8090.17515485724554372No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7750.16779359006835154No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7120.1541535950047307No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6870.1487408985509129No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6400.13856502921773545No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6360.1376989977851246No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA6300.13639995063620833No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG6270.1357504270617502No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6000.129904714891627No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5900.12773963631009988No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5630.12189392413997666No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5570.12059487699106039No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5070.10976948408342481No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5040.10911996050896666No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4830.10457329548775973No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4800.10392377191330159No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)