FastQCFastQC Report
Wed 8 May 2024
EGAF00007961370

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961370
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441872
Total Bases19.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCAGGTCCGGCTGCGGCGGCAGCATTGGACGCGCCGGGGCGG14520.3286019480754608No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG12830.2903555780859616No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12690.2871872397436362No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10510.23785168555599812No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10360.23445703733207807No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10230.23151500887134735No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9210.20843140094869103No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8980.20322627367201362No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8720.1973422167505522No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7840.17742694717022126No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7130.16135894557699967No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6920.1566064380635116No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG6910.15638012818191693No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6870.15547488865553827No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6480.14664880327334612No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6270.14189629575985807No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT6060.13714378824637No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG5920.1339754499040446No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5620.12718615345620451No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5520.12492305464025782No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5180.11722851866603903No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG4900.11089184198138828No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4650.10523409494152151No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4590.1038762356519535No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4540.10274468624398017No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)