FastQCFastQC Report
Wed 8 May 2024
EGAF00007961371

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961371
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441872
Total Bases13.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58461.3230075678024404No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20060.45397762247890794No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16480.3729586848680161No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCT15920.36028533149871456No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT13530.30619726979758843No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11220.25391968714921964No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11000.24894086975413696No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10820.24486729188543288No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10170.23015714958177935No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8970.20299996379041893No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7350.16633776297208241No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7260.1643009740377304No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7150.161811565340189No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6780.15343809972118622No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6300.14257522540464207No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG6270.14189629575985807No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA6140.13895426729912735No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5940.13442806966723397No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5920.1339754499040446No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5890.13329652025926061No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5600.12673353369301518No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5060.114512800086903No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4910.11111815186298296No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4890.11066553209979361No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG4840.10953398269182026No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4690.1061393344679002No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4610.10432885541514283No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4580.10364992577035885No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)