FastQCFastQC Report
Wed 8 May 2024
EGAF00007961372

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961372
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493739
Total Bases21.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT7050.14278799122613364No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT7020.14218038275283096No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6590.13347132796882566No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6570.1330662556532905No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6070.12293944776491222No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5260.10653401898573943No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5030.10187568735708544No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)