FastQCFastQC Report
Wed 8 May 2024
EGAF00007961373

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961373
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493739
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30680.6213809320308908No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10800.21873905038897068No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8170.16547204089610099No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT7400.14987675674799844No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6740.1365093703353391No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6470.13104089407561484No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6220.1259774901314257No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5950.12050901387170145No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)