FastQCFastQC Report
Wed 8 May 2024
EGAF00007961375

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961375
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467805
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58861.2582165645942218No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10400.22231485341114354No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7590.16224709013370955No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT6610.1412981904853518No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6500.1389467833819647No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6180.13210632635392952No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5710.12205940509400284No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5190.11094366242344568No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA4770.10196556257414949No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)