FastQCFastQC Report
Wed 8 May 2024
EGAF00007961377

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961377
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496830
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29580.5953746754423043No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11490.23126622788478957No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8500.17108467685123682No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7290.14673026991123722No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT7080.1425034720125596No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT7050.14189964374131997No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6030.12136948251917155No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5680.11432481935470884No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA5000.1006380452066099No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)