FastQCFastQC Report
Wed 8 May 2024
EGAF00007961379

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961379
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478520
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57171.1947254033269248No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10930.228412605533729No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8210.1715706762517763No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT7040.14712028755328932No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6570.1372983365376578No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5950.1243417203042715No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5800.12120705508651677No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5460.11410181392627267No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)