FastQCFastQC Report
Wed 8 May 2024
EGAF00007961380

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961380
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477877
Total Bases21 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT11990.25090138257334No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT9160.19168112296678852No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA8030.16803487089774147No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7650.16008303391876988No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6590.13790159392479656No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6310.1320423456245017No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6020.1259738384563392No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5460.1142553418557495No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5030.10525721053743956No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)