FastQCFastQC Report
Wed 8 May 2024
EGAF00007961381

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961381
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477877
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31830.6660709764228033No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16860.3528104512248968No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA12200.2552958187985611No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9700.20298110183164286No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8550.17891633202686047No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC7650.16008303391876988No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6170.1291127214743543No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5920.12388124977766246No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5700.11927755468457366No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4790.1002349977086154No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)