FastQCFastQC Report
Wed 8 May 2024
EGAF00007961383

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961383
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449485
Total Bases13.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60451.3448724651545658No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15790.35129092183276417No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA11430.2542910219473397No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8840.19666952178604402No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8740.19444475344004808No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC7550.16797001012269597No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5620.1250319810449737No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4730.10523154276560953No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4540.10100448290821717No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)