FastQCFastQC Report
Wed 8 May 2024
EGAF00007961384

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961384
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481926
Total Bases21.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT12230.2537734008955732No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT9430.19567319463984098No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA7880.16351058046256065No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7430.15417304731431797No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6560.13612048322771544No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6160.12782045376261086No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5650.11723791619460248No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4930.10229786315741421No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4900.10167536094753135No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4830.10022285579113804No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)