FastQCFastQC Report
Wed 8 May 2024
EGAF00007961385

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961385
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481926
Total Bases14.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29760.6175221922037823No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17350.36001377804891205No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA12890.26746844951299575No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9850.2043882255782008No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8510.1765831268701004No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC7480.15521055099745604No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5610.11640791324809202No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5430.11267289998879496No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5370.11142789556902928No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4820.10001535505451045No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)