FastQCFastQC Report
Wed 8 May 2024
EGAF00007961386

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961386
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458634
Total Bases20.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT11550.2518347963735789No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT9200.200595681959907No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA7670.16723574789483553No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6770.1476122572683229No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6620.14434167549723745No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6300.13736443438558849No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5800.12646249514863703No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4660.10160607368838769No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT4590.10007980219521448No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)