FastQCFastQC Report
Wed 8 May 2024
EGAF00007961387

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961387
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458634
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG59701.3016915448920054No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15720.34275696960975416No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA12040.2625186968257914No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9440.20582861279364373No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8680.1892576651534775No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC7390.1611306619221427No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5790.126244456363898No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5020.10945546993899274No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4820.10509469424421217No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT4610.10051587976469255No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4610.10051587976469255No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)